Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia abyssi |
| Strain | DSM 100673 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | star/dumbbell/pleomorphic |
| Mobility | non-motile |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 25 |
| Temperature range | mesophilic |
| Habitat | deep seawater |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | non-spore-forming |
| Energy source | organotroph; chemotroph |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1044865 bp
Thymine Count
1029763 bp
Guanine Count
1300044 bp
Cytosine Count
1357929 bp
Genome Length
4732601 bp
Protein-coding Genes
4533 genes
Non-Coding Genes
68 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | CLV88_11471 | Not Available | Positive | 3597238 - 3597684 | 15464.9 |
| threonine/homoserine/homoserine lactone efflux protein | CLV88_11472 | Not Available | Positive | 3597681 - 3598310 | 21886.0 |
| hypothetical protein | CLV88_11473 | Not Available | Positive | 3598312 - 3598773 | 16417.4 |
| holo-[acyl-carrier protein] synthase | CLV88_11474 | Not Available | Positive | 3598770 - 3599195 | 15285.4 |
| signal peptidase i | CLV88_11475 | Not Available | Positive | 3599251 - 3600087 | 30320.2 |
| rnase iii | CLV88_11476 | Not Available | Positive | 3600084 - 3600767 | 24815.7 |
| eama-like transporter family protein | CLV88_11477 | Not Available | Positive | 3600773 - 3601654 | 30540.5 |
| gtp-binding protein era | CLV88_11478 | Not Available | Positive | 3601755 - 3602663 | 33943.2 |
| hypothetical protein | CLV88_11479 | Not Available | Negative | 3602644 - 3602847 | 7624.96 |
| hypothetical protein | CLV88_11480 | Not Available | Positive | 3602919 - 3603248 | 12277.7 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
