Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia abyssi |
| Strain | DSM 100673 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | star/dumbbell/pleomorphic |
| Mobility | non-motile |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 25 |
| Temperature range | mesophilic |
| Habitat | deep seawater |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | non-spore-forming |
| Energy source | organotroph; chemotroph |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1044865 bp
Thymine Count
1029763 bp
Guanine Count
1300044 bp
Cytosine Count
1357929 bp
Genome Length
4732601 bp
Protein-coding Genes
4533 genes
Non-Coding Genes
68 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| ribonuclease hi | CLV88_11461 | Not Available | Negative | 3589262 - 3589717 | 16564.8 |
| methyltransferase family protein | CLV88_11462 | Not Available | Negative | 3589710 - 3590309 | 21184.8 |
| uncharacterized protein duf3429 | CLV88_11463 | Not Available | Negative | 3590326 - 3590787 | 16400.6 |
| 4-hydroxy-3-methylbut-2-enyl diphosphate reductase | CLV88_11464 | Not Available | Negative | 3590784 - 3591737 | 34325.4 |
| uncharacterized laba/duf88 family protein | CLV88_11465 | Not Available | Negative | 3591845 - 3592420 | 22198.5 |
| 2-amino-4-hydroxy-6- hydroxymethyldihydropteridine diphosphokinase | CLV88_11466 | Not Available | Positive | 3592577 - 3593137 | 20469.8 |
| dna-directed rna polymerase subunit omega | CLV88_11467 | Not Available | Positive | 3593213 - 3593566 | 13157.4 |
| gtp pyrophosphokinase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase | CLV88_11468 | Not Available | Positive | 3593594 - 3595729 | 79741.5 |
| hypothetical protein | CLV88_11469 | Not Available | Positive | 3595751 - 3596407 | 24769.3 |
| pyridoxine 5'-phosphate synthase | CLV88_11470 | Not Available | Positive | 3596484 - 3597230 | 27221.7 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
