Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia abyssi |
| Strain | DSM 100673 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | star/dumbbell/pleomorphic |
| Mobility | non-motile |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 25 |
| Temperature range | mesophilic |
| Habitat | deep seawater |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | non-spore-forming |
| Energy source | organotroph; chemotroph |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1044865 bp
Thymine Count
1029763 bp
Guanine Count
1300044 bp
Cytosine Count
1357929 bp
Genome Length
4732601 bp
Protein-coding Genes
4533 genes
Non-Coding Genes
68 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| dhna family fructose-bisphosphate aldolase class ia | CLV88_11441 | Not Available | Negative | 3570443 - 3571285 | 31046.9 |
| glycerol-3-phosphate dehydrogenase | CLV88_11442 | Not Available | Negative | 3571276 - 3572997 | 62865.6 |
| aryl-alcohol dehydrogenase-like predicted oxidoreductase | CLV88_11443 | Not Available | Negative | 3573048 - 3574043 | 35765.3 |
| monosaccharide abc transporter membrane protein (cut2 family) | CLV88_11444 | Not Available | Negative | 3574121 - 3575122 | 35323.5 |
| monosaccharide abc transporter atp-binding protein (cut2 family) | CLV88_11445 | Not Available | Negative | 3575137 - 3576657 | 54489.0 |
| monosaccharide abc transporter substrate-binding protein (cut2 family) | CLV88_11446 | Not Available | Negative | 3576732 - 3577748 | 36356.8 |
| lytic murein transglycosylase | CLV88_11447 | Not Available | Negative | 3578001 - 3579170 | 42874.4 |
| adenosylcobinamide-phosphate synthase | CLV88_11448 | Not Available | Negative | 3579241 - 3580149 | 32693.2 |
| l-threonine o-3-phosphate decarboxylase | CLV88_11449 | Not Available | Negative | 3580146 - 3581099 | 34087.6 |
| response regulator receiver domain-containing protein | CLV88_11450 | Not Available | Positive | 3581270 - 3581629 | 12743.1 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
