Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia abyssi |
| Strain | DSM 100673 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | star/dumbbell/pleomorphic |
| Mobility | non-motile |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 25 |
| Temperature range | mesophilic |
| Habitat | deep seawater |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | non-spore-forming |
| Energy source | organotroph; chemotroph |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1044865 bp
Thymine Count
1029763 bp
Guanine Count
1300044 bp
Cytosine Count
1357929 bp
Genome Length
4732601 bp
Protein-coding Genes
4533 genes
Non-Coding Genes
68 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | CLV88_11431 | Not Available | Positive | 3559533 - 3559892 | 13015.2 |
| dna-binding transcriptional regulator lsrr (deor family) | CLV88_11432 | Not Available | Negative | 3559910 - 3560899 | 35238.0 |
| monosaccharide abc transporter membrane protein (cut2 family) | CLV88_11433 | Not Available | Negative | 3560901 - 3561929 | 35932.1 |
| monosaccharide abc transporter membrane protein (cut2 family) | CLV88_11434 | Not Available | Negative | 3561926 - 3562957 | 35953.8 |
| monosaccharide abc transporter atp-binding protein (cut2 family) | CLV88_11435 | Not Available | Negative | 3562954 - 3564465 | 54482.8 |
| abc-type sugar transport system substrate-binding protein | CLV88_11436 | Not Available | Negative | 3564617 - 3565654 | 37096.7 |
| quinol monooxygenase ygin | CLV88_11437 | Not Available | Negative | 3565997 - 3566281 | 10459.5 |
| choline dehydrogenase | CLV88_11438 | Not Available | Negative | 3566283 - 3567902 | 59192.7 |
| zinc-binding alcohol dehydrogenase family protein | CLV88_11439 | Not Available | Negative | 3567920 - 3568936 | 36291.7 |
| l-xylulokinase | CLV88_11440 | Not Available | Negative | 3568948 - 3570450 | 53354.1 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
