Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia abyssi |
| Strain | DSM 100673 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | star/dumbbell/pleomorphic |
| Mobility | non-motile |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 25 |
| Temperature range | mesophilic |
| Habitat | deep seawater |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | non-spore-forming |
| Energy source | organotroph; chemotroph |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1044865 bp
Thymine Count
1029763 bp
Guanine Count
1300044 bp
Cytosine Count
1357929 bp
Genome Length
4732601 bp
Protein-coding Genes
4533 genes
Non-Coding Genes
68 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| gluconate 5-dehydrogenase | CLV88_11420 | Not Available | Positive | 3549214 - 3549981 | 26503.4 |
| putative pig3 family nad(p)h quinone oxidoreductase | CLV88_11421 | Not Available | Positive | 3550077 - 3551063 | 34406.3 |
| gntr family transcriptional regulator | CLV88_11422 | Not Available | Negative | 3551060 - 3551827 | 28838.6 |
| hypothetical protein | CLV88_11423 | Not Available | Positive | 3551983 - 3553197 | 44280.0 |
| hypothetical protein | CLV88_11424 | Not Available | Positive | 3553323 - 3553721 | 14293.2 |
| putative acetyltransferase | CLV88_11425 | Not Available | Negative | 3553726 - 3554196 | 16961.2 |
| putative metal-binding protein | CLV88_11426 | Not Available | Positive | 3554283 - 3554618 | 11853.3 |
| cobalt transporter subunit cbta | CLV88_11427 | Not Available | Negative | 3554621 - 3555310 | 24327.0 |
| cobalt transporter subunit cbtb | CLV88_11428 | Not Available | Negative | 3555330 - 3555497 | 5772.07 |
| condensin subunit smc | CLV88_11430 | Not Available | Positive | 3555950 - 3559405 | 127306.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
