Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia abyssi |
| Strain | DSM 100673 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | star/dumbbell/pleomorphic |
| Mobility | non-motile |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 25 |
| Temperature range | mesophilic |
| Habitat | deep seawater |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | non-spore-forming |
| Energy source | organotroph; chemotroph |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1044865 bp
Thymine Count
1029763 bp
Guanine Count
1300044 bp
Cytosine Count
1357929 bp
Genome Length
4732601 bp
Protein-coding Genes
4533 genes
Non-Coding Genes
68 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | CLV88_11410 | Not Available | Negative | 3543070 - 3543513 | 17447.9 |
| Trna-phe | Not Available | Not Available | Positive | 3543889 - 3543963 | Not Available |
| rne/rng family ribonuclease | CLV88_11412 | Not Available | Negative | 3544223 - 3545245 | 36321.6 |
| septum formation protein | CLV88_11413 | Not Available | Negative | 3545242 - 3545820 | 20917.2 |
| translation initiation factor 1 (bif-1) | CLV88_11414 | Not Available | Negative | 3545852 - 3546070 | 8312.23 |
| putative amidohydrolase | CLV88_11415 | Not Available | Negative | 3546151 - 3547029 | 31864.6 |
| acetyltransferase (gnat) family protein | CLV88_11416 | Not Available | Negative | 3547042 - 3547623 | 21538.5 |
| steroid delta-isomerase-like uncharacterized protein | CLV88_11417 | Not Available | Negative | 3547623 - 3548018 | 14475.9 |
| protein tyrosine phosphatase | CLV88_11418 | Not Available | Negative | 3548114 - 3548572 | 17137.1 |
| uncharacterized protein (upf0262 family) | CLV88_11419 | Not Available | Negative | 3548578 - 3549057 | 18101.4 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
