Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia abyssi |
| Strain | DSM 100673 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | star/dumbbell/pleomorphic |
| Mobility | non-motile |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 25 |
| Temperature range | mesophilic |
| Habitat | deep seawater |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | non-spore-forming |
| Energy source | organotroph; chemotroph |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1044865 bp
Thymine Count
1029763 bp
Guanine Count
1300044 bp
Cytosine Count
1357929 bp
Genome Length
4732601 bp
Protein-coding Genes
4533 genes
Non-Coding Genes
68 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| putative membrane-anchored protein | CLV88_101317 | Not Available | Negative | 315911 - 317191 | 47412.3 |
| nad(p) transhydrogenase subunit beta | CLV88_101318 | Not Available | Negative | 317457 - 318893 | 49906.3 |
| nad(p) transhydrogenase subunit alpha | CLV88_101319 | Not Available | Negative | 318907 - 320478 | 55559.3 |
| protein-s-isoprenylcysteine o-methyltransferase ste14 | CLV88_101320 | Not Available | Negative | 320624 - 321103 | 18130.7 |
| nad(p)-dependent dehydrogenase (short-subunit alcohol dehydrogenase family) | CLV88_101321 | Not Available | Positive | 321407 - 322159 | 26299.9 |
| hint domain-containing protein | CLV88_101322 | Not Available | Positive | 322529 - 323182 | 23793.1 |
| putative glutamine amidotransferase | CLV88_101323 | Not Available | Negative | 323169 - 323948 | 27907.2 |
| uncharacterized protein glcg (duf336 family) | CLV88_101324 | Not Available | Negative | 324018 - 324443 | 14309.3 |
| malate synthase | CLV88_101325 | Not Available | Negative | 324487 - 326634 | 77693.8 |
| aminopeptidase n | CLV88_101326 | Not Available | Positive | 326853 - 329441 | 96710.3 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
