Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia abyssi |
| Strain | DSM 100673 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | star/dumbbell/pleomorphic |
| Mobility | non-motile |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 25 |
| Temperature range | mesophilic |
| Habitat | deep seawater |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | non-spore-forming |
| Energy source | organotroph; chemotroph |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1044865 bp
Thymine Count
1029763 bp
Guanine Count
1300044 bp
Cytosine Count
1357929 bp
Genome Length
4732601 bp
Protein-coding Genes
4533 genes
Non-Coding Genes
68 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| paax family transcriptional regulator | CLV88_113110 | Not Available | Negative | 3523242 - 3524030 | 29371.6 |
| uncharacterized protein (tigr03084 family) | CLV88_113111 | Not Available | Positive | 3524126 - 3524935 | 29405.0 |
| n-methylglutamate dehydrogenase subunit a precursor | CLV88_113112 | Not Available | Positive | 3525180 - 3526430 | 45467.3 |
| sarcosine oxidase subunit delta | CLV88_113113 | Not Available | Positive | 3526443 - 3526730 | 11025.8 |
| n-methylglutamate dehydrogenase subunit c | CLV88_113114 | Not Available | Positive | 3526727 - 3529681 | 105774.0 |
| sarcosine oxidase subunit gamma | CLV88_113115 | Not Available | Positive | 3529659 - 3530246 | 20883.0 |
| transcriptional regulator glxa family with amidase domain | CLV88_113116 | Not Available | Negative | 3530238 - 3531251 | 36290.4 |
| deor family transcriptional regulator | CLV88_113117 | Not Available | Negative | 3531312 - 3532076 | 27316.6 |
| pyruvate kinase | CLV88_113118 | Not Available | Positive | 3532305 - 3533753 | 51301.7 |
| glyceraldehyde 3-phosphate dehydrogenase | CLV88_113119 | Not Available | Positive | 3533788 - 3534786 | 35270.9 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
