Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia abyssi |
| Strain | DSM 100673 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | star/dumbbell/pleomorphic |
| Mobility | non-motile |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 25 |
| Temperature range | mesophilic |
| Habitat | deep seawater |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | non-spore-forming |
| Energy source | organotroph; chemotroph |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1044865 bp
Thymine Count
1029763 bp
Guanine Count
1300044 bp
Cytosine Count
1357929 bp
Genome Length
4732601 bp
Protein-coding Genes
4533 genes
Non-Coding Genes
68 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| phosphotransferase iia-like nitrogen-regulatory protein ptsn | CLV88_113100 | Not Available | Negative | 3515617 - 3516081 | 16481.7 |
| ribosomal subunit interface protein | CLV88_113101 | Not Available | Negative | 3516125 - 3516694 | 20928.8 |
| lipopolysaccharide export system atp-binding protein | CLV88_113102 | Not Available | Negative | 3516991 - 3517749 | 28051.1 |
| lipopolysaccharide export system protein lpta | CLV88_113103 | Not Available | Negative | 3517752 - 3518231 | 16726.0 |
| lipopolysaccharide export system protein lptc | CLV88_113104 | Not Available | Negative | 3518235 - 3518801 | 20578.2 |
| arabinose-5-phosphate isomerase | CLV88_113105 | Not Available | Negative | 3518852 - 3519826 | 34015.1 |
| ribonuclease d | CLV88_113106 | Not Available | Negative | 3519826 - 3520437 | 22625.2 |
| trna a-37 threonylcarbamoyl transferase component bud32 | CLV88_113107 | Not Available | Positive | 3520572 - 3521318 | 28667.4 |
| hupe/urej protein | CLV88_113108 | Not Available | Negative | 3521324 - 3522325 | 35947.8 |
| parvulin-like peptidyl-prolyl cis-trans isomerase protein | CLV88_113109 | Not Available | Negative | 3522322 - 3523164 | 31152.2 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
