Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia abyssi |
| Strain | DSM 100673 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | star/dumbbell/pleomorphic |
| Mobility | non-motile |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 25 |
| Temperature range | mesophilic |
| Habitat | deep seawater |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | non-spore-forming |
| Energy source | organotroph; chemotroph |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1044865 bp
Thymine Count
1029763 bp
Guanine Count
1300044 bp
Cytosine Count
1357929 bp
Genome Length
4732601 bp
Protein-coding Genes
4533 genes
Non-Coding Genes
68 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| udp-glucuronate 4-epimerase | CLV88_11390 | Not Available | Positive | 3501992 - 3503011 | 38079.7 |
| hypothetical protein | CLV88_11391 | Not Available | Negative | 3502907 - 3503143 | 8699.08 |
| flaa1/epsc-like ndp-sugar epimerase | CLV88_11392 | Not Available | Negative | 3504653 - 3506536 | 68912.4 |
| polysaccharide export outer membrane protein | CLV88_11393 | Not Available | Positive | 3506924 - 3508027 | 39710.6 |
| utp--glucose-1-phosphate uridylyltransferase | CLV88_11394 | Not Available | Positive | 3508236 - 3509129 | 32455.9 |
| udp-galactose 4-epimerase | CLV88_11395 | Not Available | Positive | 3509156 - 3510139 | 36025.4 |
| glycosyltransferase involved in cell wall biosynthesis | CLV88_11396 | Not Available | Positive | 3510174 - 3511358 | 44013.5 |
| glycosyl transferase family 2 | CLV88_11397 | Not Available | Positive | 3511452 - 3512420 | 37956.0 |
| core-2/i-branching enzyme | CLV88_11398 | Not Available | Positive | 3512417 - 3514114 | 65119.7 |
| lps sulfotransferase nodh | CLV88_11399 | Not Available | Positive | 3514121 - 3515554 | 54061.1 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
