Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia abyssi |
| Strain | DSM 100673 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | star/dumbbell/pleomorphic |
| Mobility | non-motile |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 25 |
| Temperature range | mesophilic |
| Habitat | deep seawater |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | non-spore-forming |
| Energy source | organotroph; chemotroph |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1044865 bp
Thymine Count
1029763 bp
Guanine Count
1300044 bp
Cytosine Count
1357929 bp
Genome Length
4732601 bp
Protein-coding Genes
4533 genes
Non-Coding Genes
68 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| phosphate abc transporter substrate-binding protein (phot family) | CLV88_11380 | Not Available | Positive | 3490692 - 3492251 | 56681.6 |
| dna repair protein radc | CLV88_11381 | Not Available | Negative | 3492253 - 3493014 | 28379.1 |
| amino acid abc transporter substrate-binding protein (paat family) | CLV88_11382 | Not Available | Positive | 3493235 - 3494074 | 30119.4 |
| molecular chaperone dnaj | CLV88_11383 | Not Available | Negative | 3494182 - 3495324 | 40733.0 |
| molecular chaperone dnak | CLV88_11384 | Not Available | Negative | 3495405 - 3497318 | 68747.2 |
| hypothetical protein | CLV88_11385 | Not Available | Negative | 3497577 - 3498194 | 22326.1 |
| abc-type polysaccharide/polyol phosphate export permease | CLV88_11386 | Not Available | Negative | 3498191 - 3499012 | 30403.0 |
| 3'(2'),5'-bisphosphate nucleotidase | CLV88_11387 | Not Available | Positive | 3499131 - 3499928 | 28555.5 |
| 3-deoxy-manno-octulosonate cytidylyltransferase (cmp-kdo synthetase) | CLV88_11388 | Not Available | Positive | 3499938 - 3500738 | 28972.4 |
| glycosyl transferase family 2 | CLV88_11389 | Not Available | Positive | 3500735 - 3501961 | 45076.4 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
