Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia abyssi |
| Strain | DSM 100673 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | star/dumbbell/pleomorphic |
| Mobility | non-motile |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 25 |
| Temperature range | mesophilic |
| Habitat | deep seawater |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | non-spore-forming |
| Energy source | organotroph; chemotroph |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1044865 bp
Thymine Count
1029763 bp
Guanine Count
1300044 bp
Cytosine Count
1357929 bp
Genome Length
4732601 bp
Protein-coding Genes
4533 genes
Non-Coding Genes
68 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| l,d-transpeptidase-like protein | CLV88_11360 | Not Available | Positive | 3469752 - 3470348 | 22291.3 |
| hypothetical protein | CLV88_11361 | Not Available | Positive | 3470493 - 3470675 | 5935.29 |
| ferrochelatase | CLV88_11362 | Not Available | Negative | 3470768 - 3471820 | 39955.5 |
| methyltransferase family protein | CLV88_11363 | Not Available | Negative | 3471852 - 3472550 | 25272.8 |
| comf family protein | CLV88_11364 | Not Available | Positive | 3472587 - 3473420 | 30101.9 |
| glutaredoxin 3 | CLV88_11365 | Not Available | Positive | 3473457 - 3473714 | 9449.39 |
| putative amidohydrolase | CLV88_11366 | Not Available | Positive | 3473720 - 3474550 | 30069.5 |
| marr family transcriptional regulator | CLV88_11367 | Not Available | Positive | 3474550 - 3474990 | 16227.8 |
| 3-demethylubiquinone-9 3-methyltransferase | CLV88_11368 | Not Available | Negative | 3474993 - 3475739 | 27204.6 |
| prolyl aminopeptidase | CLV88_11369 | Not Available | Positive | 3475790 - 3476761 | 36806.8 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
