Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia abyssi |
| Strain | DSM 100673 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | star/dumbbell/pleomorphic |
| Mobility | non-motile |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 25 |
| Temperature range | mesophilic |
| Habitat | deep seawater |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | non-spore-forming |
| Energy source | organotroph; chemotroph |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1044865 bp
Thymine Count
1029763 bp
Guanine Count
1300044 bp
Cytosine Count
1357929 bp
Genome Length
4732601 bp
Protein-coding Genes
4533 genes
Non-Coding Genes
68 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hpt domain-containing protein | CLV88_11350 | Not Available | Negative | 3459872 - 3460195 | 11788.9 |
| sigma-b regulation protein rsbu (phosphoserine phosphatase) | CLV88_11351 | Not Available | Positive | 3460357 - 3461634 | 46553.0 |
| 8-oxo-dgtp diphosphatase | CLV88_11352 | Not Available | Negative | 3461631 - 3462080 | 16724.9 |
| molecular chaperone hsp33 | CLV88_11353 | Not Available | Positive | 3462159 - 3463151 | 35990.2 |
| nudix domain-containing protein | CLV88_11354 | Not Available | Positive | 3463144 - 3463743 | 22195.6 |
| poly(a) polymerase | CLV88_11355 | Not Available | Positive | 3463740 - 3464900 | 41215.8 |
| atp-binding cassette subfamily b multidrug efflux pump | CLV88_11356 | Not Available | Positive | 3465387 - 3467228 | 67531.0 |
| 23s rrna m(5)u-1939 methyltransferase | CLV88_11357 | Not Available | Positive | 3467268 - 3468482 | 43040.9 |
| l,d-transpeptidase-like protein | CLV88_11358 | Not Available | Positive | 3468574 - 3469068 | 18615.3 |
| cysteine-rich secretory protein family protein | CLV88_11359 | Not Available | Negative | 3469059 - 3469580 | 18439.8 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
