Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia abyssi |
| Strain | DSM 100673 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | star/dumbbell/pleomorphic |
| Mobility | non-motile |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 25 |
| Temperature range | mesophilic |
| Habitat | deep seawater |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | non-spore-forming |
| Energy source | organotroph; chemotroph |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1044865 bp
Thymine Count
1029763 bp
Guanine Count
1300044 bp
Cytosine Count
1357929 bp
Genome Length
4732601 bp
Protein-coding Genes
4533 genes
Non-Coding Genes
68 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| rnase ph | CLV88_11340 | Not Available | Negative | 3449471 - 3450184 | 25198.4 |
| heat-inducible transcription repressor hrca | CLV88_11341 | Not Available | Positive | 3450301 - 3451365 | 39039.4 |
| molecular chaperone grpe | CLV88_11342 | Not Available | Positive | 3451376 - 3451936 | 20891.5 |
| tlp18.3/psb32/molo-1 phosphatase superfamily protein | CLV88_11343 | Not Available | Positive | 3451991 - 3452641 | 24463.3 |
| dna mismatch repair protein muts | CLV88_11344 | Not Available | Negative | 3453049 - 3455712 | 95912.8 |
| peptide-methionine (s)-s-oxide reductase | CLV88_11345 | Not Available | Negative | 3455812 - 3456474 | 24046.2 |
| hypothetical protein | CLV88_11346 | Not Available | Positive | 3456639 - 3457439 | 30004.0 |
| scp-2 sterol transfer family protein | CLV88_11347 | Not Available | Negative | 3457384 - 3457665 | 9915.37 |
| argininosuccinate synthase | CLV88_11348 | Not Available | Negative | 3457748 - 3458971 | 45492.2 |
| hypothetical protein | CLV88_11349 | Not Available | Positive | 3459107 - 3459841 | 25720.6 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
