Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia abyssi |
| Strain | DSM 100673 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | star/dumbbell/pleomorphic |
| Mobility | non-motile |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 25 |
| Temperature range | mesophilic |
| Habitat | deep seawater |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | non-spore-forming |
| Energy source | organotroph; chemotroph |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1044865 bp
Thymine Count
1029763 bp
Guanine Count
1300044 bp
Cytosine Count
1357929 bp
Genome Length
4732601 bp
Protein-coding Genes
4533 genes
Non-Coding Genes
68 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| atp-dependent hsluv protease atp-binding subunit hslu | CLV88_11320 | Not Available | Positive | 3430845 - 3432155 | 48198.8 |
| sugar phosphate permease | CLV88_11321 | Not Available | Positive | 3432183 - 3433406 | 44077.5 |
| dna-nicking smr family endonuclease | CLV88_11322 | Not Available | Negative | 3433403 - 3433978 | 21595.8 |
| membrane-bound lytic murein transglycosylase a | CLV88_11323 | Not Available | Negative | 3433975 - 3434988 | 37529.1 |
| tim44-like domain-containing protein | CLV88_11324 | Not Available | Negative | 3435009 - 3435668 | 24022.4 |
| upf0716 protein fxsa | CLV88_11325 | Not Available | Positive | 3435773 - 3436273 | 18037.2 |
| protein translocase subunit secb | CLV88_11326 | Not Available | Positive | 3436328 - 3436828 | 18741.3 |
| dna polymerase-3 subunit epsilon | CLV88_11327 | Not Available | Negative | 3436860 - 3437591 | 27159.4 |
| dephospho-coa kinase | CLV88_11328 | Not Available | Negative | 3437584 - 3438180 | 21627.1 |
| shikimate dehydrogenase | CLV88_11329 | Not Available | Negative | 3438177 - 3439007 | 29559.8 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
