Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia abyssi |
| Strain | DSM 100673 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | star/dumbbell/pleomorphic |
| Mobility | non-motile |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 25 |
| Temperature range | mesophilic |
| Habitat | deep seawater |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | non-spore-forming |
| Energy source | organotroph; chemotroph |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1044865 bp
Thymine Count
1029763 bp
Guanine Count
1300044 bp
Cytosine Count
1357929 bp
Genome Length
4732601 bp
Protein-coding Genes
4533 genes
Non-Coding Genes
68 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | CLV88_11310 | Not Available | Positive | 3417818 - 3418777 | 35260.8 |
| trna threonylcarbamoyladenosine biosynthesis protein tsae | CLV88_11311 | Not Available | Positive | 3419378 - 3419851 | 17421.7 |
| hypothetical protein | CLV88_11312 | Not Available | Positive | 3419848 - 3420873 | 38295.9 |
| murnac alpha-1-phosphate uridylyltransferase | CLV88_11313 | Not Available | Positive | 3420870 - 3421538 | 23824.7 |
| double-strand break repair protein addb | CLV88_11314 | Not Available | Positive | 3421531 - 3424455 | 108123.0 |
| dna helicase/exodeoxyribonuclease v subunit a | CLV88_11315 | Not Available | Positive | 3424455 - 3427841 | 124081.0 |
| thioredoxin | CLV88_11316 | Not Available | Positive | 3427877 - 3428197 | 11236.3 |
| hypothetical protein | CLV88_11317 | Not Available | Negative | 3428254 - 3429246 | 38668.1 |
| hslv component of hsluv peptidase | CLV88_11318 | Not Available | Positive | 3429260 - 3429817 | 19484.3 |
| aryl-alcohol dehydrogenase-like predicted oxidoreductase | CLV88_11319 | Not Available | Positive | 3429814 - 3430848 | 37381.5 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
