Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia abyssi |
| Strain | DSM 100673 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | star/dumbbell/pleomorphic |
| Mobility | non-motile |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 25 |
| Temperature range | mesophilic |
| Habitat | deep seawater |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | non-spore-forming |
| Energy source | organotroph; chemotroph |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1044865 bp
Thymine Count
1029763 bp
Guanine Count
1300044 bp
Cytosine Count
1357929 bp
Genome Length
4732601 bp
Protein-coding Genes
4533 genes
Non-Coding Genes
68 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | CLV88_112141 | Not Available | Positive | 3409404 - 3409520 | 4581.88 |
| hypothetical protein | CLV88_1131 | Not Available | Negative | 3409552 - 3410409 | 31368.0 |
| adenosylhomocysteinase | CLV88_1132 | Not Available | Negative | 3410678 - 3412066 | 50719.7 |
| hypothetical protein | CLV88_1133 | Not Available | Negative | 3412157 - 3412471 | 11061.3 |
| glycosyl transferase family 8 | CLV88_1134 | Not Available | Positive | 3412716 - 3413732 | 38953.9 |
| metal dependent phosphohydrolase | CLV88_1135 | Not Available | Positive | 3413798 - 3414382 | 21813.3 |
| l-amino acid n-acyltransferase ynca | CLV88_1136 | Not Available | Positive | 3414379 - 3414873 | 18069.4 |
| response regulator receiver protein | CLV88_1137 | Not Available | Negative | 3415003 - 3415557 | 20246.1 |
| protein sco1/2 | CLV88_1138 | Not Available | Negative | 3415630 - 3416259 | 23053.2 |
| two-component system sensor histidine kinase regb | CLV88_1139 | Not Available | Positive | 3416346 - 3417731 | 50856.8 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
