Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia abyssi |
| Strain | DSM 100673 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | star/dumbbell/pleomorphic |
| Mobility | non-motile |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 25 |
| Temperature range | mesophilic |
| Habitat | deep seawater |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | non-spore-forming |
| Energy source | organotroph; chemotroph |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1044865 bp
Thymine Count
1029763 bp
Guanine Count
1300044 bp
Cytosine Count
1357929 bp
Genome Length
4732601 bp
Protein-coding Genes
4533 genes
Non-Coding Genes
68 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hydroxypyruvate reductase | CLV88_112121 | Not Available | Positive | 3389695 - 3390654 | 34567.0 |
| dna polymerase | CLV88_112122 | Not Available | Positive | 3390726 - 3391511 | 28569.7 |
| molybdenum cofactor biosynthesis protein b | CLV88_112123 | Not Available | Positive | 3391647 - 3392180 | 19460.1 |
| hlyd family secretion protein | CLV88_112124 | Not Available | Positive | 3392324 - 3393778 | 51990.3 |
| multidrug efflux pump subunit acrb | CLV88_112125 | Not Available | Positive | 3393782 - 3397174 | 122576.0 |
| dihydrofolate reductase | CLV88_112126 | Not Available | Positive | 3397299 - 3397826 | 19092.7 |
| disulfide bond corrector protein dsbc | CLV88_112127 | Not Available | Negative | 3397882 - 3398679 | 28298.1 |
| putative transcriptional regulator | CLV88_112128 | Not Available | Positive | 3398839 - 3399423 | 20443.3 |
| 3-hydroxybutyryl-coa dehydratase | CLV88_112129 | Not Available | Negative | 3399495 - 3399938 | 16302.8 |
| had superfamily hydrolase (tigr01450 family) | CLV88_112130 | Not Available | Negative | 3400042 - 3400917 | 31202.2 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
