Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia abyssi |
| Strain | DSM 100673 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | star/dumbbell/pleomorphic |
| Mobility | non-motile |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 25 |
| Temperature range | mesophilic |
| Habitat | deep seawater |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | non-spore-forming |
| Energy source | organotroph; chemotroph |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1044865 bp
Thymine Count
1029763 bp
Guanine Count
1300044 bp
Cytosine Count
1357929 bp
Genome Length
4732601 bp
Protein-coding Genes
4533 genes
Non-Coding Genes
68 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | CLV88_112111 | Not Available | Negative | 3381934 - 3382074 | 4997.21 |
| endonuclease/exonuclease/phosphatase family metal-dependent hydrolase | CLV88_112112 | Not Available | Negative | 3382230 - 3383030 | 29779.3 |
| hypothetical protein | CLV88_112113 | Not Available | Negative | 3383084 - 3383842 | 26698.3 |
| sam-dependent mida family methyltransferase | CLV88_112114 | Not Available | Negative | 3383839 - 3384897 | 37888.3 |
| prolipoprotein diacylglyceryl transferase | CLV88_112115 | Not Available | Negative | 3384894 - 3385775 | 32096.8 |
| hypothetical protein | CLV88_112116 | Not Available | Positive | 3385885 - 3386124 | 9000.68 |
| multidrug efflux system outer membrane protein | CLV88_112117 | Not Available | Positive | 3386271 - 3387665 | 51465.8 |
| hypothetical protein | CLV88_112118 | Not Available | Positive | 3388008 - 3388508 | 18920.4 |
| pyrroline-5-carboxylate reductase | CLV88_112119 | Not Available | Positive | 3388552 - 3389367 | 27420.3 |
| pp_03302 | CLV88_112120 | Not Available | Positive | 3389360 - 3389698 | Not Available |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
