Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia abyssi |
| Strain | DSM 100673 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | star/dumbbell/pleomorphic |
| Mobility | non-motile |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 25 |
| Temperature range | mesophilic |
| Habitat | deep seawater |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | non-spore-forming |
| Energy source | organotroph; chemotroph |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1044865 bp
Thymine Count
1029763 bp
Guanine Count
1300044 bp
Cytosine Count
1357929 bp
Genome Length
4732601 bp
Protein-coding Genes
4533 genes
Non-Coding Genes
68 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| 5-carboxymethyl-2-hydroxymuconic-semialdehyde dehydrogenase | CLV88_112101 | Not Available | Positive | 3370607 - 3372151 | 55906.6 |
| 3,4-dihydroxyphenylacetate 2,3-dioxygenase | CLV88_112102 | Not Available | Positive | 3372206 - 3373057 | 31144.9 |
| glucokinase | CLV88_112103 | Not Available | Negative | 3373074 - 3374000 | 32033.5 |
| monosaccharide abc transporter atp-binding protein (cut2 family) | CLV88_112104 | Not Available | Negative | 3374014 - 3374778 | 27557.2 |
| d-xylose transport system permease protein | CLV88_112105 | Not Available | Negative | 3374791 - 3376056 | 44641.9 |
| xylose-binding protein | CLV88_112106 | Not Available | Negative | 3376206 - 3377228 | 35682.0 |
| putative nbd/hsp70 family sugar kinase | CLV88_112107 | Not Available | Positive | 3377432 - 3378622 | 42270.8 |
| vcbs repeat protein | CLV88_112108 | Not Available | Positive | 3378615 - 3380141 | 55102.4 |
| eal domain-containing protein (putative c-di-gmp-specific phosphodiesterase class i) | CLV88_112109 | Not Available | Negative | 3380156 - 3381010 | 31335.6 |
| dna-3-methyladenine glycosylase i | CLV88_112110 | Not Available | Positive | 3381113 - 3381724 | 23177.7 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
