Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia abyssi |
| Strain | DSM 100673 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | star/dumbbell/pleomorphic |
| Mobility | non-motile |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 25 |
| Temperature range | mesophilic |
| Habitat | deep seawater |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | non-spore-forming |
| Energy source | organotroph; chemotroph |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1044865 bp
Thymine Count
1029763 bp
Guanine Count
1300044 bp
Cytosine Count
1357929 bp
Genome Length
4732601 bp
Protein-coding Genes
4533 genes
Non-Coding Genes
68 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | CLV88_11281 | Not Available | Negative | 3351051 - 3351314 | 9217.77 |
| hypothetical protein | CLV88_11282 | Not Available | Positive | 3351345 - 3351674 | 11733.4 |
| hypothetical protein | CLV88_11283 | Not Available | Negative | 3351546 - 3352262 | 26621.5 |
| excinuclease abc subunit b | CLV88_11284 | Not Available | Negative | 3352265 - 3354451 | 81674.2 |
| sam (sterile alpha motif) domain-containing protein | CLV88_11285 | Not Available | Positive | 3355502 - 3359110 | 132089.0 |
| uncharacterized protein duf4242 | CLV88_11286 | Not Available | Positive | 3359141 - 3359398 | 9862.61 |
| fad/fmn-containing dehydrogenase | CLV88_11287 | Not Available | Positive | 3359527 - 3360942 | 50285.7 |
| tolb-like protein | CLV88_11288 | Not Available | Negative | 3360969 - 3362192 | 44945.5 |
| transcriptional regulator | CLV88_11289 | Not Available | Negative | 3362205 - 3362417 | 7818.48 |
| methyltransferase family protein | CLV88_11290 | Not Available | Positive | 3362698 - 3363180 | 16913.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
