Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia abyssi |
| Strain | DSM 100673 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | star/dumbbell/pleomorphic |
| Mobility | non-motile |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 25 |
| Temperature range | mesophilic |
| Habitat | deep seawater |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | non-spore-forming |
| Energy source | organotroph; chemotroph |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1044865 bp
Thymine Count
1029763 bp
Guanine Count
1300044 bp
Cytosine Count
1357929 bp
Genome Length
4732601 bp
Protein-coding Genes
4533 genes
Non-Coding Genes
68 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| lysr family transcriptional regulator | CLV88_11271 | Not Available | Negative | 3345161 - 3346126 | 35556.8 |
| hypothetical protein | CLV88_11272 | Not Available | Negative | 3346209 - 3346529 | 11919.4 |
| hypothetical protein | CLV88_11273 | Not Available | Negative | 3346636 - 3347307 | 24620.0 |
| antibiotic biosynthesis monooxygenase | CLV88_11274 | Not Available | Positive | 3347427 - 3347747 | 12290.5 |
| nucleotide-binding universal stress uspa family protein | CLV88_11275 | Not Available | Positive | 3347842 - 3348249 | 14641.5 |
| nucleotide-binding universal stress uspa family protein | CLV88_11276 | Not Available | Positive | 3348282 - 3348689 | 14839.7 |
| hypothetical protein | CLV88_11277 | Not Available | Positive | 3348706 - 3349203 | 18074.3 |
| sugar phosphate isomerase/epimerase | CLV88_11278 | Not Available | Positive | 3349296 - 3350111 | 30093.8 |
| hypothetical protein | CLV88_11279 | Not Available | Positive | 3350280 - 3350531 | 9536.18 |
| hypothetical protein | CLV88_11280 | Not Available | Negative | 3350629 - 3351051 | 15177.9 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
