Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia abyssi |
| Strain | DSM 100673 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | star/dumbbell/pleomorphic |
| Mobility | non-motile |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 25 |
| Temperature range | mesophilic |
| Habitat | deep seawater |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | non-spore-forming |
| Energy source | organotroph; chemotroph |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1044865 bp
Thymine Count
1029763 bp
Guanine Count
1300044 bp
Cytosine Count
1357929 bp
Genome Length
4732601 bp
Protein-coding Genes
4533 genes
Non-Coding Genes
68 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| isovaleryl-coa dehydrogenase | CLV88_101297 | Not Available | Negative | 292252 - 293415 | 42194.7 |
| dtdp-4-amino-4,6-dideoxygalactose transaminase | CLV88_101298 | Not Available | Negative | 293595 - 294800 | 43185.1 |
| 2-methylcitrate dehydratase prpd | CLV88_101299 | Not Available | Positive | 294965 - 296272 | 46569.2 |
| phosphoglycolate phosphatase | CLV88_101300 | Not Available | Negative | 296245 - 296916 | 23510.3 |
| udp-n-acetylglucosamine pyrophosphorylase /glucosamine-1-phosphate n-acetyltransferase | CLV88_101301 | Not Available | Positive | 297055 - 298407 | 48091.5 |
| glucosamine--fructose-6-phosphate aminotransferase (isomerizing) | CLV88_101302 | Not Available | Positive | 298409 - 300232 | 64750.8 |
| pyridoxamine 5'-phosphate oxidase | CLV88_101303 | Not Available | Positive | 300243 - 300800 | 20772.5 |
| 3-methyladenine dna glycosylase alkd | CLV88_101304 | Not Available | Positive | 300790 - 301473 | 25940.8 |
| hypothetical protein | CLV88_101305 | Not Available | Negative | 301516 - 301941 | 14908.1 |
| cyclic pyranopterin monophosphate synthase subunit moaa | CLV88_101306 | Not Available | Positive | 302024 - 303031 | 38349.3 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
