Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia abyssi |
| Strain | DSM 100673 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | star/dumbbell/pleomorphic |
| Mobility | non-motile |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 25 |
| Temperature range | mesophilic |
| Habitat | deep seawater |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | non-spore-forming |
| Energy source | organotroph; chemotroph |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1044865 bp
Thymine Count
1029763 bp
Guanine Count
1300044 bp
Cytosine Count
1357929 bp
Genome Length
4732601 bp
Protein-coding Genes
4533 genes
Non-Coding Genes
68 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| ketopantoate reductase | CLV88_11261 | Not Available | Positive | 3336528 - 3337559 | 36922.1 |
| 8-oxo-dgtp pyrophosphatase mutt (nudix family) | CLV88_11262 | Not Available | Negative | 3337595 - 3338056 | 17309.8 |
| atp-dependent helicase hrpb | CLV88_11263 | Not Available | Negative | 3338170 - 3340614 | 89254.7 |
| uncharacterized protein duf3108 | CLV88_11264 | Not Available | Negative | 3340642 - 3341394 | 27412.6 |
| lao/ao transport system kinase | CLV88_11265 | Not Available | Positive | 3341430 - 3342413 | 35400.8 |
| lsu ribosomal protein l28p | CLV88_11266 | Not Available | Positive | 3342538 - 3342828 | 10342.5 |
| hypothetical protein | CLV88_11267 | Not Available | Positive | 3342934 - 3343281 | 12200.1 |
| hypothetical protein | CLV88_11268 | Not Available | Positive | 3343330 - 3343803 | 16629.8 |
| nad-dependent deacetylase | CLV88_11269 | Not Available | Negative | 3343890 - 3344591 | 24661.0 |
| protein-tyrosine phosphatase | CLV88_11270 | Not Available | Positive | 3344689 - 3345147 | 16563.5 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
