Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia abyssi |
| Strain | DSM 100673 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | star/dumbbell/pleomorphic |
| Mobility | non-motile |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 25 |
| Temperature range | mesophilic |
| Habitat | deep seawater |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | non-spore-forming |
| Energy source | organotroph; chemotroph |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1044865 bp
Thymine Count
1029763 bp
Guanine Count
1300044 bp
Cytosine Count
1357929 bp
Genome Length
4732601 bp
Protein-coding Genes
4533 genes
Non-Coding Genes
68 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | CLV88_11251 | Not Available | Positive | 3325239 - 3325379 | 5377.58 |
| d-alanyl-d-alanine carboxypeptidase/d-alanyl-d-alanine-endopeptidase (penicillin-binding protein 4) | CLV88_11252 | Not Available | Positive | 3325433 - 3326893 | 51883.6 |
| hypothetical protein | CLV88_11253 | Not Available | Positive | 3326883 - 3327929 | 38887.3 |
| tellurite resistance protein | CLV88_11254 | Not Available | Negative | 3327945 - 3328367 | 15530.6 |
| lysyl-trna synthetase class i | CLV88_11255 | Not Available | Positive | 3328499 - 3330085 | 59862.8 |
| uncharacterized protein duf4864 | CLV88_11256 | Not Available | Positive | 3330184 - 3330582 | 15117.1 |
| pectate lyase-like protein | CLV88_11257 | Not Available | Positive | 3330730 - 3333066 | 84164.1 |
| putative membrane protein | CLV88_11258 | Not Available | Negative | 3333108 - 3334010 | 31344.0 |
| acetylornithine aminotransferase | CLV88_11259 | Not Available | Positive | 3334268 - 3335452 | 41287.3 |
| ornithine carbamoyltransferase | CLV88_11260 | Not Available | Positive | 3335457 - 3336383 | 34185.7 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
