Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia abyssi |
| Strain | DSM 100673 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | star/dumbbell/pleomorphic |
| Mobility | non-motile |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 25 |
| Temperature range | mesophilic |
| Habitat | deep seawater |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | non-spore-forming |
| Energy source | organotroph; chemotroph |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1044865 bp
Thymine Count
1029763 bp
Guanine Count
1300044 bp
Cytosine Count
1357929 bp
Genome Length
4732601 bp
Protein-coding Genes
4533 genes
Non-Coding Genes
68 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| secreted protein | CLV88_11241 | Not Available | Negative | 3315740 - 3316885 | 40904.3 |
| hypothetical protein | CLV88_11242 | Not Available | Negative | 3316914 - 3317096 | 6347.77 |
| laci family transcriptional regulator | CLV88_11243 | Not Available | Positive | 3317122 - 3318288 | 41851.2 |
| aspartyl/glutamyl-trna(asn/gln) amidotransferase subunit c | CLV88_11244 | Not Available | Positive | 3318409 - 3318729 | 11688.0 |
| aspartyl/glutamyl-trna(asn/gln) amidotransferase subunit a | CLV88_11245 | Not Available | Positive | 3318729 - 3320216 | 52319.3 |
| hypothetical protein | CLV88_11246 | Not Available | Positive | 3320251 - 3321108 | 29619.1 |
| n-acetylmuramoyl-l-alanine amidase | CLV88_11247 | Not Available | Positive | 3321112 - 3321789 | 25358.1 |
| atp-binding cassette chvd family protein | CLV88_11248 | Not Available | Negative | 3321867 - 3323522 | 61636.0 |
| marr family transcriptional regulator with acetyltransferase activity | CLV88_11249 | Not Available | Negative | 3323652 - 3324527 | 32533.9 |
| nicotinate-nucleotide adenylyltransferase | CLV88_11250 | Not Available | Positive | 3324624 - 3325226 | 22267.9 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
