Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia abyssi |
| Strain | DSM 100673 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | star/dumbbell/pleomorphic |
| Mobility | non-motile |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 25 |
| Temperature range | mesophilic |
| Habitat | deep seawater |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | non-spore-forming |
| Energy source | organotroph; chemotroph |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1044865 bp
Thymine Count
1029763 bp
Guanine Count
1300044 bp
Cytosine Count
1357929 bp
Genome Length
4732601 bp
Protein-coding Genes
4533 genes
Non-Coding Genes
68 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| ferredoxin | CLV88_11231 | Not Available | Negative | 3306236 - 3307396 | 43025.0 |
| nucleotide-binding universal stress uspa family protein | CLV88_11232 | Not Available | Negative | 3307638 - 3308045 | 14523.7 |
| (2r)-3-sulfolactate dehydrogenase (nadp+) | CLV88_11233 | Not Available | Negative | 3308142 - 3309176 | 35394.5 |
| (2r)-sulfolactate sulfo-lyase subunit beta | CLV88_11234 | Not Available | Negative | 3309198 - 3310379 | 42580.4 |
| (2r)-sulfolactate sulfo-lyase subunit alpha | CLV88_11235 | Not Available | Negative | 3310392 - 3310682 | 10486.5 |
| threonine dehydrogenase-like zn-dependent dehydrogenase | CLV88_11236 | Not Available | Negative | 3310721 - 3311695 | 34242.6 |
| gluconate 5-dehydrogenase | CLV88_11237 | Not Available | Negative | 3311692 - 3312450 | 26365.2 |
| sulfopropanediol 3-dehydrogenase | CLV88_11238 | Not Available | Negative | 3312455 - 3313762 | 46700.9 |
| tripartite atp-independent transporter dctm subunit | CLV88_11239 | Not Available | Negative | 3313772 - 3315100 | 46310.6 |
| trap-type c4-dicarboxylate transport system permease small subunit | CLV88_11240 | Not Available | Negative | 3315112 - 3315627 | 19688.4 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
