Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia abyssi |
| Strain | DSM 100673 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | star/dumbbell/pleomorphic |
| Mobility | non-motile |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 25 |
| Temperature range | mesophilic |
| Habitat | deep seawater |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | non-spore-forming |
| Energy source | organotroph; chemotroph |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1044865 bp
Thymine Count
1029763 bp
Guanine Count
1300044 bp
Cytosine Count
1357929 bp
Genome Length
4732601 bp
Protein-coding Genes
4533 genes
Non-Coding Genes
68 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| d-3-phosphoglycerate dehydrogenase | CLV88_11221 | Not Available | Negative | 3294533 - 3295513 | 35813.8 |
| hypothetical protein | CLV88_11222 | Not Available | Negative | 3295516 - 3295695 | 6625.8 |
| universal stress protein family protein | CLV88_11223 | Not Available | Negative | 3295708 - 3296526 | 29237.7 |
| hypothetical protein | CLV88_11224 | Not Available | Negative | 3296523 - 3297623 | 38291.6 |
| tcta family transporter | CLV88_11225 | Not Available | Negative | 3297620 - 3299650 | 71033.2 |
| tripartite-type tricarboxylate transporter receptor subunit tctc | CLV88_11226 | Not Available | Negative | 3299725 - 3300813 | 38696.5 |
| two-component system ompr family response regulator | CLV88_11227 | Not Available | Positive | 3300933 - 3301625 | 25371.6 |
| two-component system sensor histidine kinase tcte | CLV88_11228 | Not Available | Positive | 3301622 - 3303022 | 51069.3 |
| hypothetical protein | CLV88_11229 | Not Available | Positive | 3303163 - 3303654 | 19640.5 |
| small-conductance mechanosensitive channel | CLV88_11230 | Not Available | Negative | 3303933 - 3306239 | 84748.3 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
