Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia abyssi |
| Strain | DSM 100673 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | star/dumbbell/pleomorphic |
| Mobility | non-motile |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 25 |
| Temperature range | mesophilic |
| Habitat | deep seawater |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | non-spore-forming |
| Energy source | organotroph; chemotroph |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1044865 bp
Thymine Count
1029763 bp
Guanine Count
1300044 bp
Cytosine Count
1357929 bp
Genome Length
4732601 bp
Protein-coding Genes
4533 genes
Non-Coding Genes
68 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| n-methylhydantoinase b | CLV88_11211 | Not Available | Negative | 3284634 - 3286328 | 59927.1 |
| phenylpyruvate tautomerase ppta (4-oxalocrotonate tautomerase family) | CLV88_11212 | Not Available | Negative | 3286325 - 3286891 | 21166.4 |
| gntr family transcriptional regulator | CLV88_11213 | Not Available | Positive | 3287036 - 3287836 | 28734.5 |
| 3-isopropylmalate/(r)-2-methylmalate dehydratase large subunit | CLV88_11214 | Not Available | Positive | 3287836 - 3289242 | 49613.2 |
| 3-isopropylmalate/(r)-2-methylmalate dehydratase small subunit | CLV88_11215 | Not Available | Positive | 3289242 - 3289853 | 21627.6 |
| trap-type c4-dicarboxylate transport system substrate-binding protein | CLV88_11216 | Not Available | Positive | 3289938 - 3290948 | 36904.9 |
| trap-type c4-dicarboxylate transport system permease small subunit | CLV88_11217 | Not Available | Positive | 3291006 - 3291506 | 18583.3 |
| tripartite atp-independent transporter dctm subunit | CLV88_11218 | Not Available | Positive | 3291506 - 3292813 | 46458.6 |
| hypothetical protein | CLV88_11219 | Not Available | Positive | 3293634 - 3294125 | 19652.5 |
| hypothetical protein | CLV88_11220 | Not Available | Positive | 3294427 - 3294561 | 4726.99 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
