Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia abyssi |
| Strain | DSM 100673 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | star/dumbbell/pleomorphic |
| Mobility | non-motile |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 25 |
| Temperature range | mesophilic |
| Habitat | deep seawater |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | non-spore-forming |
| Energy source | organotroph; chemotroph |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1044865 bp
Thymine Count
1029763 bp
Guanine Count
1300044 bp
Cytosine Count
1357929 bp
Genome Length
4732601 bp
Protein-coding Genes
4533 genes
Non-Coding Genes
68 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | CLV88_1121 | Not Available | Positive | 3273436 - 3273612 | 6528.91 |
| putative circularly permuted atp-grasp superfamily protein | CLV88_1122 | Not Available | Positive | 3273670 - 3275097 | 52702.1 |
| putative alpha-e superfamily protein | CLV88_1123 | Not Available | Positive | 3275102 - 3276043 | 35700.7 |
| transglutaminase-like putative cysteine protease | CLV88_1124 | Not Available | Positive | 3276056 - 3276853 | 28407.4 |
| putative proteasome-type protease | CLV88_1125 | Not Available | Positive | 3276902 - 3277636 | 26815.3 |
| putative transposase | CLV88_1126 | Not Available | Positive | 3278825 - 3279529 | 27493.3 |
| fumarate reductase flavoprotein subunit | CLV88_1127 | Not Available | Negative | 3279713 - 3281125 | 48608.4 |
| 2-methylisocitrate lyase-like pep mutase family enzyme | CLV88_1128 | Not Available | Negative | 3281094 - 3281960 | 30379.0 |
| nicotinamidase-related amidase | CLV88_1129 | Not Available | Negative | 3281957 - 3282577 | 22102.5 |
| n-methylhydantoinase a | CLV88_11210 | Not Available | Negative | 3282574 - 3284637 | 72572.5 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
