Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia abyssi |
| Strain | DSM 100673 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | star/dumbbell/pleomorphic |
| Mobility | non-motile |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 25 |
| Temperature range | mesophilic |
| Habitat | deep seawater |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | non-spore-forming |
| Energy source | organotroph; chemotroph |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1044865 bp
Thymine Count
1029763 bp
Guanine Count
1300044 bp
Cytosine Count
1357929 bp
Genome Length
4732601 bp
Protein-coding Genes
4533 genes
Non-Coding Genes
68 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| orotidine-5'-phosphate decarboxylase | CLV88_111127 | Not Available | Negative | 3262282 - 3262977 | 23957.8 |
| hypothetical protein | CLV88_111128 | Not Available | Negative | 3263054 - 3263314 | 9683.62 |
| atp-dependent clp protease atp-binding subunit clpb | CLV88_111129 | Not Available | Positive | 3263570 - 3266185 | 95153.8 |
| n-acetylglutamate synthase-like gnat family acetyltransferase | CLV88_111130 | Not Available | Positive | 3266332 - 3266784 | 16409.8 |
| glutamate synthase domain-containing protein 2 | CLV88_111131 | Not Available | Positive | 3266923 - 3268431 | 54740.1 |
| multidrug resistance efflux pump | CLV88_111132 | Not Available | Negative | 3268457 - 3269653 | 42315.9 |
| hypothetical protein | CLV88_111133 | Not Available | Negative | 3269646 - 3270071 | 15598.7 |
| sulfoxide reductase catalytic subunit yedy | CLV88_111134 | Not Available | Positive | 3270334 - 3271239 | 34235.8 |
| hypothetical protein | CLV88_111135 | Not Available | Negative | 3271449 - 3272105 | 24239.8 |
| sulfoxide reductase heme-binding subunit yedz | CLV88_111136 | Not Available | Positive | 3272267 - 3272866 | 22669.9 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
