Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia abyssi |
| Strain | DSM 100673 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | star/dumbbell/pleomorphic |
| Mobility | non-motile |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 25 |
| Temperature range | mesophilic |
| Habitat | deep seawater |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | non-spore-forming |
| Energy source | organotroph; chemotroph |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1044865 bp
Thymine Count
1029763 bp
Guanine Count
1300044 bp
Cytosine Count
1357929 bp
Genome Length
4732601 bp
Protein-coding Genes
4533 genes
Non-Coding Genes
68 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| c-5 sterol desaturase | CLV88_111117 | Not Available | Positive | 3253224 - 3254168 | 36652.1 |
| arac family transcriptional regulator with amidase-like domain | CLV88_111118 | Not Available | Negative | 3254169 - 3255110 | 34355.2 |
| acyl-coa dehydrogenase | CLV88_111119 | Not Available | Positive | 3255187 - 3256347 | 42801.9 |
| selenoprotein w-related protein | CLV88_111120 | Not Available | Positive | 3256660 - 3256944 | 10747.0 |
| acetyl-coa synthetase | CLV88_111121 | Not Available | Positive | 3256941 - 3258965 | 70485.0 |
| crotonobetainyl-coa hydratase | CLV88_111122 | Not Available | Positive | 3258958 - 3259743 | 28358.9 |
| methyltransferase family protein | CLV88_111123 | Not Available | Negative | 3259826 - 3260464 | 22392.3 |
| nucleoside-diphosphate-sugar epimerase | CLV88_111124 | Not Available | Positive | 3260513 - 3261409 | 32750.9 |
| hypothetical protein | CLV88_111125 | Not Available | Positive | 3261455 - 3261706 | 9510.6 |
| gluconate kinase | CLV88_111126 | Not Available | Negative | 3261728 - 3262267 | 20474.4 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
