Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia abyssi |
| Strain | DSM 100673 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | star/dumbbell/pleomorphic |
| Mobility | non-motile |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 25 |
| Temperature range | mesophilic |
| Habitat | deep seawater |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | non-spore-forming |
| Energy source | organotroph; chemotroph |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1044865 bp
Thymine Count
1029763 bp
Guanine Count
1300044 bp
Cytosine Count
1357929 bp
Genome Length
4732601 bp
Protein-coding Genes
4533 genes
Non-Coding Genes
68 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| ion channel | CLV88_111107 | Not Available | Positive | 3243509 - 3244171 | 24438.6 |
| putative enzyme related to lactoylglutathione lyase | CLV88_111108 | Not Available | Positive | 3244168 - 3244536 | 13501.3 |
| mfs transporter | CLV88_111109 | Not Available | Negative | 3244556 - 3245746 | 42276.1 |
| dna-binding protein hu-beta | CLV88_111110 | Not Available | Negative | 3246023 - 3246310 | 9973.31 |
| amp nucleosidase | CLV88_111111 | Not Available | Negative | 3246468 - 3247946 | 54324.3 |
| adenine deaminase | CLV88_111112 | Not Available | Negative | 3247943 - 3249760 | 64249.7 |
| hypothetical protein | CLV88_111113 | Not Available | Positive | 3249774 - 3250250 | 17557.1 |
| lysr family glycine cleavage system transcriptional activator | CLV88_111114 | Not Available | Negative | 3250426 - 3251289 | 32317.7 |
| ribulose-5-phosphate 4-epimerase/fuculose-1-phosphate aldolase | CLV88_111115 | Not Available | Positive | 3251407 - 3252162 | 28256.2 |
| sterol desaturase/sphingolipid hydroxylase (fatty acid hydroxylase superfamily) | CLV88_111116 | Not Available | Positive | 3252193 - 3253203 | 40089.6 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
