Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia abyssi |
| Strain | DSM 100673 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | star/dumbbell/pleomorphic |
| Mobility | non-motile |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 25 |
| Temperature range | mesophilic |
| Habitat | deep seawater |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | non-spore-forming |
| Energy source | organotroph; chemotroph |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1044865 bp
Thymine Count
1029763 bp
Guanine Count
1300044 bp
Cytosine Count
1357929 bp
Genome Length
4732601 bp
Protein-coding Genes
4533 genes
Non-Coding Genes
68 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| nadh dehydrogenase subunit b | CLV88_101287 | Not Available | Negative | 283951 - 284484 | 19530.7 |
| nadh dehydrogenase subunit a | CLV88_101288 | Not Available | Negative | 284475 - 284840 | 13961.3 |
| catechol 2,3-dioxygenase-like lactoylglutathione lyase family enzyme | CLV88_101289 | Not Available | Negative | 285307 - 285723 | 14613.0 |
| methylglutaconyl-coa hydratase | CLV88_101290 | Not Available | Negative | 285799 - 286578 | 27440.6 |
| hydroxymethylglutaryl-coa lyase | CLV88_101291 | Not Available | Negative | 286590 - 287441 | 29733.3 |
| 3-methylcrotonoyl-coa carboxylase alpha subunit | CLV88_101292 | Not Available | Negative | 287443 - 289380 | 68407.6 |
| hypothetical protein | CLV88_101293 | Not Available | Negative | 289504 - 289803 | 10558.5 |
| 3-methylcrotonyl-coa carboxylase beta subunit | CLV88_101294 | Not Available | Negative | 289803 - 291410 | 57036.1 |
| hypothetical protein | CLV88_101295 | Not Available | Negative | 291407 - 291658 | 9126.74 |
| uncharacterized protein yect (duf1311 family) | CLV88_101296 | Not Available | Negative | 291758 - 292255 | 17405.5 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
