Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia abyssi |
| Strain | DSM 100673 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | star/dumbbell/pleomorphic |
| Mobility | non-motile |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 25 |
| Temperature range | mesophilic |
| Habitat | deep seawater |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | non-spore-forming |
| Energy source | organotroph; chemotroph |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1044865 bp
Thymine Count
1029763 bp
Guanine Count
1300044 bp
Cytosine Count
1357929 bp
Genome Length
4732601 bp
Protein-coding Genes
4533 genes
Non-Coding Genes
68 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | CLV88_11187 | Not Available | Negative | 3226127 - 3226501 | 15010.9 |
| hypothetical protein | CLV88_11188 | Not Available | Negative | 3226534 - 3226731 | 7739.24 |
| lysr substrate binding domain-containing protein | CLV88_11189 | Not Available | Positive | 3227756 - 3228079 | 11947.5 |
| Trna-val | Not Available | Not Available | Positive | 3228607 - 3228681 | Not Available |
| n-formylglutamate deformylase | CLV88_11191 | Not Available | Positive | 3228830 - 3229693 | 32160.3 |
| dna polymerase-4 | CLV88_11192 | Not Available | Negative | 3229698 - 3230951 | 46421.1 |
| 8-oxo-dgtp diphosphatase | CLV88_11193 | Not Available | Positive | 3230985 - 3231428 | 16923.9 |
| 1-deoxy-d-xylulose-5-phosphate synthase | CLV88_11194 | Not Available | Negative | 3231425 - 3233353 | 68342.9 |
| farnesyl diphosphate synthase | CLV88_11195 | Not Available | Negative | 3233370 - 3234239 | 30553.5 |
| exodeoxyribonuclease vii small subunit | CLV88_11196 | Not Available | Negative | 3234259 - 3234501 | 8709.34 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
