Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia abyssi |
| Strain | DSM 100673 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | star/dumbbell/pleomorphic |
| Mobility | non-motile |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 25 |
| Temperature range | mesophilic |
| Habitat | deep seawater |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | non-spore-forming |
| Energy source | organotroph; chemotroph |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1044865 bp
Thymine Count
1029763 bp
Guanine Count
1300044 bp
Cytosine Count
1357929 bp
Genome Length
4732601 bp
Protein-coding Genes
4533 genes
Non-Coding Genes
68 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | CLV88_11177 | Not Available | Negative | 3214367 - 3216289 | 69900.8 |
| long-chain acyl-coa synthetase | CLV88_11178 | Not Available | Positive | 3216486 - 3218456 | 73101.7 |
| amino acid/amide abc transporter atp-binding protein 1 (haat family) | CLV88_11179 | Not Available | Positive | 3218453 - 3219268 | 30136.5 |
| amino acid/amide abc transporter membrane protein 1 (haat family) | CLV88_11180 | Not Available | Positive | 3219310 - 3220311 | 36045.0 |
| hypothetical protein | CLV88_11181 | Not Available | Positive | 3220316 - 3220570 | 9061.79 |
| amino acid/amide abc transporter membrane protein 2 (haat family) | CLV88_11182 | Not Available | Positive | 3220570 - 3221646 | 39441.9 |
| amino acid/amide abc transporter substrate-binding protein (haat family) | CLV88_11183 | Not Available | Positive | 3221724 - 3223007 | 46164.9 |
| amino acid/amide abc transporter atp-binding protein 2 (haat family) | CLV88_11184 | Not Available | Positive | 3223081 - 3223902 | 30362.5 |
| phenylacetate-coa ligase | CLV88_11185 | Not Available | Positive | 3224030 - 3225259 | 43390.9 |
| transposase | CLV88_11186 | Not Available | Negative | 3225693 - 3225908 | 7874.61 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
