Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia abyssi |
| Strain | DSM 100673 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | star/dumbbell/pleomorphic |
| Mobility | non-motile |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 25 |
| Temperature range | mesophilic |
| Habitat | deep seawater |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | non-spore-forming |
| Energy source | organotroph; chemotroph |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1044865 bp
Thymine Count
1029763 bp
Guanine Count
1300044 bp
Cytosine Count
1357929 bp
Genome Length
4732601 bp
Protein-coding Genes
4533 genes
Non-Coding Genes
68 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| sulfotransferase family protein | CLV88_11167 | Not Available | Negative | 3206168 - 3206986 | 31482.4 |
| core-2/i-branching enzyme | CLV88_11168 | Not Available | Positive | 3207132 - 3208709 | 61654.8 |
| abc-2 type transport system atp-binding protein | CLV88_11169 | Not Available | Negative | 3208726 - 3209658 | 33903.0 |
| putative zn-finger protein | CLV88_11170 | Not Available | Positive | 3209765 - 3209947 | 6789.01 |
| broad specificity phosphatase phoe | CLV88_11171 | Not Available | Negative | 3209958 - 3210617 | 24457.0 |
| n-carbamoyl-l-amino-acid hydrolase | CLV88_11172 | Not Available | Positive | 3210735 - 3211931 | 42616.5 |
| wgr domain-containing protein | CLV88_11173 | Not Available | Negative | 3211928 - 3212155 | 8492.23 |
| uncharacterized protein (duf1330 family) | CLV88_11174 | Not Available | Negative | 3212213 - 3212494 | 9628.32 |
| lysr family transcriptional regulator | CLV88_11175 | Not Available | Positive | 3212580 - 3213449 | 31927.8 |
| dna-binding response ompr family regulator | CLV88_11176 | Not Available | Negative | 3213666 - 3214370 | 25848.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
