Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia abyssi |
| Strain | DSM 100673 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | star/dumbbell/pleomorphic |
| Mobility | non-motile |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 25 |
| Temperature range | mesophilic |
| Habitat | deep seawater |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | non-spore-forming |
| Energy source | organotroph; chemotroph |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1044865 bp
Thymine Count
1029763 bp
Guanine Count
1300044 bp
Cytosine Count
1357929 bp
Genome Length
4732601 bp
Protein-coding Genes
4533 genes
Non-Coding Genes
68 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| trna u34 5-methylaminomethyl-2-thiouridine-forming methyltransferase mnmc | CLV88_11157 | Not Available | Negative | 3197841 - 3198518 | 24486.9 |
| glycine/d-amino acid oxidase-like deaminating enzyme | CLV88_11158 | Not Available | Positive | 3198597 - 3199613 | 35555.7 |
| 3-methylfumaryl-coa hydratase | CLV88_11159 | Not Available | Negative | 3199610 - 3200413 | 29744.5 |
| catechol 2,3-dioxygenase-like lactoylglutathione lyase family enzyme | CLV88_11160 | Not Available | Positive | 3200452 - 3200847 | 14243.8 |
| chromate reductase | CLV88_11161 | Not Available | Negative | 3200844 - 3201380 | 18895.5 |
| outer membrane protein ompa-like peptidoglycan-associated protein | CLV88_11162 | Not Available | Negative | 3201547 - 3202200 | 22710.6 |
| arac family transcriptional regulator of adaptative response/methylated-dna-[protein]-cysteine methyltransferase | CLV88_11163 | Not Available | Negative | 3202319 - 3203164 | 30931.3 |
| voltage-gated sodium channel | CLV88_11164 | Not Available | Positive | 3203310 - 3204092 | 28997.4 |
| dna-(apurinic or apyrimidinic site) lyase /endonuclease iii | CLV88_11165 | Not Available | Positive | 3204136 - 3204780 | 24196.4 |
| sugar/nucleoside kinase (ribokinase family) | CLV88_11166 | Not Available | Positive | 3204777 - 3205766 | 35158.4 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
