Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia abyssi |
| Strain | DSM 100673 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | star/dumbbell/pleomorphic |
| Mobility | non-motile |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 25 |
| Temperature range | mesophilic |
| Habitat | deep seawater |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | non-spore-forming |
| Energy source | organotroph; chemotroph |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1044865 bp
Thymine Count
1029763 bp
Guanine Count
1300044 bp
Cytosine Count
1357929 bp
Genome Length
4732601 bp
Protein-coding Genes
4533 genes
Non-Coding Genes
68 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| acetolactate synthase-1/2/3 large subunit/sulfoacetaldehyde acetyltransferase | CLV88_11137 | Not Available | Positive | 3174526 - 3176205 | 59260.0 |
| mosc domain-containing protein yiim | CLV88_11138 | Not Available | Negative | 3176465 - 3177169 | 25807.6 |
| marr family transcriptional regulator | CLV88_11139 | Not Available | Negative | 3177170 - 3177634 | 16686.6 |
| putative transposase | CLV88_11140 | Not Available | Negative | 3178555 - 3179307 | 28907.9 |
| dna gyrase subunit b | CLV88_11141 | Not Available | Negative | 3179879 - 3182296 | 89386.6 |
| dna replication and repair protein recf | CLV88_11142 | Not Available | Negative | 3182391 - 3183497 | 40641.5 |
| dna polymerase iii beta subunit | CLV88_11143 | Not Available | Negative | 3183551 - 3184669 | 40406.1 |
| chromosomal replication initiator protein dnaa | CLV88_11144 | Not Available | Negative | 3184894 - 3186264 | 51717.2 |
| ssu ribosomal protein s20p | CLV88_11145 | Not Available | Negative | 3186742 - 3187005 | 9782.96 |
| hypothetical protein | CLV88_11146 | Not Available | Positive | 3187310 - 3187648 | 12243.8 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
