Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia abyssi |
| Strain | DSM 100673 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | star/dumbbell/pleomorphic |
| Mobility | non-motile |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 25 |
| Temperature range | mesophilic |
| Habitat | deep seawater |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | non-spore-forming |
| Energy source | organotroph; chemotroph |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1044865 bp
Thymine Count
1029763 bp
Guanine Count
1300044 bp
Cytosine Count
1357929 bp
Genome Length
4732601 bp
Protein-coding Genes
4533 genes
Non-Coding Genes
68 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| periplasmic nitrate reductase chaperone napd | CLV88_11117 | Not Available | Negative | 3153690 - 3153953 | 9528.33 |
| ferredoxin-type protein napf | CLV88_11118 | Not Available | Negative | 3153947 - 3154447 | 17853.1 |
| hypothetical protein | CLV88_11119 | Not Available | Negative | 3154444 - 3154998 | 20403.3 |
| crp-like camp-binding protein | CLV88_11120 | Not Available | Positive | 3155139 - 3155822 | 25033.3 |
| formyl-coa transferase | CLV88_11121 | Not Available | Negative | 3155823 - 3157016 | 42351.9 |
| na+-transporting nadh:ubiquinone oxidoreductase subunit f | CLV88_11122 | Not Available | Negative | 3157179 - 3158402 | 45051.7 |
| na+-transporting nadh:ubiquinone oxidoreductase subunit e | CLV88_11123 | Not Available | Negative | 3158415 - 3159023 | 21408.9 |
| na+-transporting nadh:ubiquinone oxidoreductase subunit d | CLV88_11124 | Not Available | Negative | 3159023 - 3159676 | 23619.8 |
| na+-transporting nadh:ubiquinone oxidoreductase subunit c | CLV88_11125 | Not Available | Negative | 3159676 - 3160491 | 28915.2 |
| na+-transporting nadh:ubiquinone oxidoreductase subunit b | CLV88_11126 | Not Available | Negative | 3160484 - 3161683 | 43861.3 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
