Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia abyssi |
| Strain | DSM 100673 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | star/dumbbell/pleomorphic |
| Mobility | non-motile |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 25 |
| Temperature range | mesophilic |
| Habitat | deep seawater |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | non-spore-forming |
| Energy source | organotroph; chemotroph |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1044865 bp
Thymine Count
1029763 bp
Guanine Count
1300044 bp
Cytosine Count
1357929 bp
Genome Length
4732601 bp
Protein-coding Genes
4533 genes
Non-Coding Genes
68 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| carbohydrate abc transporter membrane protein 1 (cut1 family) | CLV88_1117 | Not Available | Negative | 3142614 - 3143849 | 45156.0 |
| carbohydrate abc transporter substrate-binding protein (cut1 family) | CLV88_1118 | Not Available | Negative | 3143914 - 3145269 | 48447.9 |
| laci family transcriptional regulator | CLV88_1119 | Not Available | Negative | 3145295 - 3146428 | 41161.0 |
| alcohol dehydrogenase | CLV88_11110 | Not Available | Negative | 3146726 - 3147763 | 36277.8 |
| hypothetical protein | CLV88_11111 | Not Available | Negative | 3147935 - 3148192 | 8541.92 |
| cytochrome c-type protein napc | CLV88_11112 | Not Available | Negative | 3148197 - 3148913 | 27400.3 |
| periplasmic nitrate reductase subunit napb | CLV88_11113 | Not Available | Negative | 3148937 - 3149371 | 16011.0 |
| ferredoxin-type protein naph | CLV88_11114 | Not Available | Negative | 3149393 - 3150313 | 33832.7 |
| periplasmic nitrate reductase subunit napg | CLV88_11115 | Not Available | Negative | 3150313 - 3151131 | 29140.8 |
| periplasmic nitrate reductase subunit napa apoprotein | CLV88_11116 | Not Available | Negative | 3151188 - 3153677 | 93569.4 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
