Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia abyssi |
| Strain | DSM 100673 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | star/dumbbell/pleomorphic |
| Mobility | non-motile |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 25 |
| Temperature range | mesophilic |
| Habitat | deep seawater |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | non-spore-forming |
| Energy source | organotroph; chemotroph |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1044865 bp
Thymine Count
1029763 bp
Guanine Count
1300044 bp
Cytosine Count
1357929 bp
Genome Length
4732601 bp
Protein-coding Genes
4533 genes
Non-Coding Genes
68 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | CLV88_101277 | Not Available | Negative | 275616 - 276032 | 14881.4 |
| nadh dehydrogenase subunit g | CLV88_101278 | Not Available | Negative | 276041 - 278053 | 71624.7 |
| hypothetical protein | CLV88_101279 | Not Available | Negative | 278057 - 278461 | 14721.8 |
| hypothetical protein | CLV88_101280 | Not Available | Negative | 278565 - 278927 | 13188.5 |
| nadh dehydrogenase subunit f | CLV88_101281 | Not Available | Negative | 278934 - 280229 | 47283.8 |
| hypothetical protein | CLV88_101282 | Not Available | Negative | 280234 - 280458 | 8327.29 |
| nadh dehydrogenase subunit e | CLV88_101283 | Not Available | Negative | 280462 - 281739 | 45715.9 |
| nadh dehydrogenase subunit d | CLV88_101284 | Not Available | Negative | 281739 - 282965 | 46281.5 |
| putative lumazine-binding protein | CLV88_101285 | Not Available | Negative | 282972 - 283352 | 14389.0 |
| nadh dehydrogenase subunit c | CLV88_101286 | Not Available | Negative | 283349 - 283954 | 23532.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
