Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia abyssi |
| Strain | DSM 100673 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | star/dumbbell/pleomorphic |
| Mobility | non-motile |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 25 |
| Temperature range | mesophilic |
| Habitat | deep seawater |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | non-spore-forming |
| Energy source | organotroph; chemotroph |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1044865 bp
Thymine Count
1029763 bp
Guanine Count
1300044 bp
Cytosine Count
1357929 bp
Genome Length
4732601 bp
Protein-coding Genes
4533 genes
Non-Coding Genes
68 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| ssu ribosomal protein s10p | CLV88_110146 | Not Available | Negative | 3134050 - 3134358 | 11506.0 |
| uncharacterized protein duf995 | CLV88_110147 | Not Available | Negative | 3134666 - 3135097 | 15970.2 |
| regulatory luxr family protein | CLV88_110148 | Not Available | Negative | 3135370 - 3136179 | 29481.2 |
| hypothetical protein | CLV88_110149 | Not Available | Positive | 3136378 - 3136456 | 2949.52 |
| enolase-like protein | CLV88_1111 | Not Available | Positive | 3136457 - 3136576 | 4340.16 |
| ribokinase | CLV88_1112 | Not Available | Positive | 3136681 - 3137559 | 30488.1 |
| hypothetical protein | CLV88_1113 | Not Available | Negative | 3137592 - 3138839 | 46927.8 |
| carbohydrate abc transporter atp-binding protein (cut1 family) | CLV88_1114 | Not Available | Negative | 3139107 - 3140153 | 38012.7 |
| hypothetical protein | CLV88_1115 | Not Available | Negative | 3140153 - 3141400 | 46870.5 |
| carbohydrate abc transporter membrane protein 2 (cut1 family) | CLV88_1116 | Not Available | Negative | 3141406 - 3142614 | 43986.2 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
