Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia abyssi |
| Strain | DSM 100673 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | star/dumbbell/pleomorphic |
| Mobility | non-motile |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 25 |
| Temperature range | mesophilic |
| Habitat | deep seawater |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | non-spore-forming |
| Energy source | organotroph; chemotroph |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1044865 bp
Thymine Count
1029763 bp
Guanine Count
1300044 bp
Cytosine Count
1357929 bp
Genome Length
4732601 bp
Protein-coding Genes
4533 genes
Non-Coding Genes
68 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| lsu ribosomal protein l16p | CLV88_110136 | Not Available | Negative | 3127572 - 3127985 | 15608.4 |
| ssu ribosomal protein s3p | CLV88_110137 | Not Available | Negative | 3127999 - 3128709 | 26684.5 |
| lsu ribosomal protein l22p | CLV88_110138 | Not Available | Negative | 3128709 - 3129089 | 14078.4 |
| ssu ribosomal protein s19p | CLV88_110139 | Not Available | Negative | 3129093 - 3129371 | 10479.6 |
| lsu ribosomal protein l2p | CLV88_110140 | Not Available | Negative | 3129375 - 3130217 | 30515.9 |
| hypothetical protein | CLV88_110141 | Not Available | Negative | 3130609 - 3131151 | 20414.1 |
| hypothetical protein | CLV88_110142 | Not Available | Positive | 3131499 - 3132278 | 28377.3 |
| lsu ribosomal protein l23p | CLV88_110143 | Not Available | Negative | 3132405 - 3132701 | 10732.1 |
| lsu ribosomal protein l4p | CLV88_110144 | Not Available | Negative | 3132698 - 3133315 | 22360.0 |
| lsu ribosomal protein l3p | CLV88_110145 | Not Available | Negative | 3133312 - 3134034 | 25121.3 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
