Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia abyssi |
| Strain | DSM 100673 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | star/dumbbell/pleomorphic |
| Mobility | non-motile |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 25 |
| Temperature range | mesophilic |
| Habitat | deep seawater |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | non-spore-forming |
| Energy source | organotroph; chemotroph |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1044865 bp
Thymine Count
1029763 bp
Guanine Count
1300044 bp
Cytosine Count
1357929 bp
Genome Length
4732601 bp
Protein-coding Genes
4533 genes
Non-Coding Genes
68 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| ssu ribosomal protein s8p | CLV88_110126 | Not Available | Negative | 3122679 - 3123068 | 14018.9 |
| ssu ribosomal protein s14p | CLV88_110127 | Not Available | Negative | 3123081 - 3123386 | 11678.5 |
| lsu ribosomal protein l5p | CLV88_110128 | Not Available | Negative | 3123405 - 3123965 | 20724.1 |
| lsu ribosomal protein l24p | CLV88_110129 | Not Available | Negative | 3123958 - 3124269 | 10908.3 |
| lsu ribosomal protein l14p | CLV88_110130 | Not Available | Negative | 3124271 - 3124639 | 13455.6 |
| ssu ribosomal protein s17p | CLV88_110131 | Not Available | Negative | 3124740 - 3124970 | 8723.59 |
| lsu ribosomal protein l29p | CLV88_110132 | Not Available | Negative | 3124985 - 3125185 | 7494.93 |
| cyclic nucleotide-binding domain-containing protein | CLV88_110133 | Not Available | Negative | 3125396 - 3126070 | 25210.7 |
| uncharacterized protein (tigr02466 family) | CLV88_110134 | Not Available | Negative | 3126131 - 3126751 | 23371.4 |
| hypothetical protein | CLV88_110135 | Not Available | Negative | 3126805 - 3127416 | 23391.9 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
