Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia abyssi |
| Strain | DSM 100673 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | star/dumbbell/pleomorphic |
| Mobility | non-motile |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 25 |
| Temperature range | mesophilic |
| Habitat | deep seawater |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | non-spore-forming |
| Energy source | organotroph; chemotroph |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1044865 bp
Thymine Count
1029763 bp
Guanine Count
1300044 bp
Cytosine Count
1357929 bp
Genome Length
4732601 bp
Protein-coding Genes
4533 genes
Non-Coding Genes
68 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| ssu ribosomal protein s13p | CLV88_110115 | Not Available | Negative | 3116501 - 3116869 | 13642.6 |
| adenylate kinase | CLV88_110117 | Not Available | Negative | 3117198 - 3117773 | 20228.3 |
| protein translocase subunit secy/sec61 alpha | CLV88_110118 | Not Available | Negative | 3117770 - 3119131 | 48860.8 |
| lsu ribosomal protein l15p | CLV88_110119 | Not Available | Negative | 3119238 - 3119711 | 16488.2 |
| uncharacterized protein yjis (duf1127 family) | CLV88_110120 | Not Available | Negative | 3120002 - 3120217 | 8105.58 |
| uncharacterized protein yjis (duf1127 family) | CLV88_110121 | Not Available | Negative | 3120431 - 3120640 | 7878.34 |
| lsu ribosomal protein l30p | CLV88_110122 | Not Available | Negative | 3120887 - 3121075 | 7005.72 |
| ssu ribosomal protein s5p | CLV88_110123 | Not Available | Negative | 3121088 - 3121657 | 20617.0 |
| lsu ribosomal protein l18p | CLV88_110124 | Not Available | Negative | 3121764 - 3122123 | 12829.6 |
| lsu ribosomal protein l6p | CLV88_110125 | Not Available | Negative | 3122135 - 3122668 | 19353.4 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
