Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia abyssi |
| Strain | DSM 100673 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | star/dumbbell/pleomorphic |
| Mobility | non-motile |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 25 |
| Temperature range | mesophilic |
| Habitat | deep seawater |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | non-spore-forming |
| Energy source | organotroph; chemotroph |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1044865 bp
Thymine Count
1029763 bp
Guanine Count
1300044 bp
Cytosine Count
1357929 bp
Genome Length
4732601 bp
Protein-coding Genes
4533 genes
Non-Coding Genes
68 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| beta-barrel assembly complex subunit bamf | CLV88_11094 | Not Available | Negative | 3097517 - 3098032 | 18826.4 |
| signal peptidase ii | CLV88_11095 | Not Available | Negative | 3098085 - 3098555 | 17323.4 |
| phosphoribosylaminoimidazolecarboxamide formyltransferase/imp cyclohydrolase | CLV88_11096 | Not Available | Negative | 3098663 - 3100252 | 55492.1 |
| putative heparinase superfamily protein | CLV88_11097 | Not Available | Negative | 3100275 - 3102017 | 63790.8 |
| 16s rrna (cytosine967-c5)-methyltransferase | CLV88_11098 | Not Available | Negative | 3102185 - 3103492 | 46879.6 |
| hypothetical protein | CLV88_11099 | Not Available | Positive | 3103571 - 3103762 | 6992.08 |
| n-acetylglucosamine kinase | CLV88_110100 | Not Available | Negative | 3103759 - 3104667 | 32116.3 |
| glycine betaine/proline transport system permease protein | CLV88_110101 | Not Available | Negative | 3104848 - 3106908 | 73021.7 |
| glycine betaine/proline transport system atp-binding protein | CLV88_110102 | Not Available | Negative | 3106905 - 3107957 | 38239.2 |
| glycine betaine/proline transport system substrate-binding protein | CLV88_110103 | Not Available | Negative | 3107964 - 3108923 | 34051.4 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
