Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia abyssi |
| Strain | DSM 100673 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | star/dumbbell/pleomorphic |
| Mobility | non-motile |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 25 |
| Temperature range | mesophilic |
| Habitat | deep seawater |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | non-spore-forming |
| Energy source | organotroph; chemotroph |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1044865 bp
Thymine Count
1029763 bp
Guanine Count
1300044 bp
Cytosine Count
1357929 bp
Genome Length
4732601 bp
Protein-coding Genes
4533 genes
Non-Coding Genes
68 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| manganese/zinc/iron transport system permease protein | CLV88_11084 | Not Available | Negative | 3084018 - 3085223 | 42089.5 |
| manganese/zinc/iron transport system atp- binding protein | CLV88_11085 | Not Available | Negative | 3085227 - 3086024 | 28637.7 |
| manganese/zinc/iron transport system substrate-binding protein | CLV88_11086 | Not Available | Negative | 3086026 - 3086991 | 34125.7 |
| deoxyribose-phosphate aldolase | CLV88_11087 | Not Available | Positive | 3087191 - 3088195 | 36335.7 |
| aldehyde dehydrogenase (nad+) | CLV88_11088 | Not Available | Positive | 3088206 - 3090551 | 83017.8 |
| diguanylate cyclase (ggdef)-like protein | CLV88_11089 | Not Available | Negative | 3090699 - 3092204 | 55368.0 |
| uncharacterized protein duf3179 | CLV88_11090 | Not Available | Negative | 3092348 - 3093733 | 51027.0 |
| methyltransferase family protein | CLV88_11091 | Not Available | Positive | 3093924 - 3094694 | 28802.7 |
| zinc protease | CLV88_11092 | Not Available | Negative | 3094736 - 3096034 | 46463.1 |
| zinc protease | CLV88_11093 | Not Available | Negative | 3096031 - 3097365 | 49347.2 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
