Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia abyssi |
| Strain | DSM 100673 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | star/dumbbell/pleomorphic |
| Mobility | non-motile |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 25 |
| Temperature range | mesophilic |
| Habitat | deep seawater |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | non-spore-forming |
| Energy source | organotroph; chemotroph |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1044865 bp
Thymine Count
1029763 bp
Guanine Count
1300044 bp
Cytosine Count
1357929 bp
Genome Length
4732601 bp
Protein-coding Genes
4533 genes
Non-Coding Genes
68 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| ribosomal large subunit pseudouridine synthase c | CLV88_11074 | Not Available | Negative | 3069076 - 3070119 | 38616.6 |
| camphor resistance protein crcb | CLV88_11075 | Not Available | Negative | 3070116 - 3070493 | 12996.4 |
| putative atpase | CLV88_11076 | Not Available | Negative | 3070596 - 3071912 | 47520.7 |
| uncharacterized protein duf3775 | CLV88_11077 | Not Available | Negative | 3072048 - 3072374 | 11798.9 |
| dna recombination protein rmuc | CLV88_11078 | Not Available | Negative | 3072542 - 3073930 | 51272.5 |
| dna mismatch repair protein mutl | CLV88_11079 | Not Available | Negative | 3073999 - 3075906 | 68318.5 |
| hypothetical protein | CLV88_11080 | Not Available | Positive | 3076065 - 3077414 | 48324.4 |
| 5-oxoprolinase (atp-hydrolysing) | CLV88_11081 | Not Available | Negative | 3077555 - 3081133 | 127432.0 |
| sulp family sulfate permease | CLV88_11082 | Not Available | Positive | 3081309 - 3083033 | 60936.0 |
| manganese/zinc/iron transport system permease protein | CLV88_11083 | Not Available | Negative | 3083095 - 3084021 | 32143.3 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
