Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia abyssi |
| Strain | DSM 100673 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | star/dumbbell/pleomorphic |
| Mobility | non-motile |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 25 |
| Temperature range | mesophilic |
| Habitat | deep seawater |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | non-spore-forming |
| Energy source | organotroph; chemotroph |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1044865 bp
Thymine Count
1029763 bp
Guanine Count
1300044 bp
Cytosine Count
1357929 bp
Genome Length
4732601 bp
Protein-coding Genes
4533 genes
Non-Coding Genes
68 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | CLV88_11064 | Not Available | Positive | 3060080 - 3060196 | 4196.33 |
| n-acetylglutamate kinase | CLV88_11065 | Not Available | Positive | 3060764 - 3061627 | 30172.6 |
| hypothetical protein | CLV88_11066 | Not Available | Positive | 3061783 - 3062445 | 23952.3 |
| phosphohistidine phosphatase | CLV88_11067 | Not Available | Positive | 3062435 - 3062926 | 18339.4 |
| l-glutamine abc transporter atp-binding protein /l-glutamate abc transporter atp-binding protein /l-aspartate abc transporter atp-binding protein /l-asparagine abc transporter atp-binding protein | CLV88_11068 | Not Available | Negative | 3063000 - 3063791 | 29898.1 |
| l-glutamine abc transporter membrane protein /l-glutamate abc transporter membrane protein /l-aspartate abc transporter membrane protein /l-asparagine abc transporter membrane protein | CLV88_11069 | Not Available | Negative | 3063807 - 3065102 | 47022.7 |
| l-glutamine abc transporter membrane protein /l-glutamate abc transporter membrane protein /l-aspartate abc transporter membrane protein /l-asparagine abc transporter membrane protein | CLV88_11070 | Not Available | Negative | 3065106 - 3066338 | 44797.7 |
| l-glutamine-binding protein /l-glutamate-binding protein /l-aspartate-binding protein /l-asparagine-binding protein | CLV88_11071 | Not Available | Negative | 3066475 - 3067491 | 35384.6 |
| chaperone required for assembly of f1-atpase | CLV88_11072 | Not Available | Negative | 3067695 - 3068402 | 26180.9 |
| phosphoglycolate phosphatase | CLV88_11073 | Not Available | Negative | 3068405 - 3069079 | 23971.8 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
